creating a small component for Joomla myself, I got into the problem to link to an anchor while having SEF (search engine friendly Urls) enabled.
Searching the Joomla forum got me to some helpful topics: Anchors in templates with SEF and this one.
So you have to use
<a href="<?php echo sefRelToAbs( 'index.php?'. $_SERVER['QUERY_STRING'] . '#blabla' ); ?>">Content</a>
to get to an anchor on the current page!